Document Report Example
MicW2Graph
Wastewater treatment (WWT) is the process of removing contaminants from used water before it is discharged back into the environment, which contributes to address water scarcity and to protect aquatic ecosystems. In this project, we investigated the microbiome of WWT to build MicW2Graph, an open-source knowledge graph (KG) that integrates metagenomic and metatranscriptomic information with their biological context, including biological processes, environmental and phenotypic features, chemical compounds, and additional metadata. We developed a workflow to collect meta-omics datasets from MGnify and infer potential interactions among microorganisms through microbial association networks (MANs). MicW2Graph enables the investigation of research questions related to WWT, focusing on aspects such as microbial connections, community memberships, and potential ecological functions.